Intelligence at Scale
Intelligence for every colony
Simplify daily management with Colony+AMI for predictive insights that keep your operations efficient and reproducible.
Control
Manage cages, tasks, strains, and breeding in one platform.
Efficiency
Flag underproducing breeders and reduce unnecessary animal waste.
Optimization
Forecast demand, consolidate cages, and align breeding plans to experimental goals, preventing unnecessary animal births.
Integration
Flow genotyping results directly into colony records.
Scalability
Designed for labs of all sizes and breeding core programs.
Data export
Export list views to excel or PDF at any time.
Add AMI anytime to expand your Colony Basic account with advanced intelligence
Try it Today
Scalable accuracy for every study
See Colony in action
Enter your enrollment key at the link below to try out the Colony software.
If you don’t have an enrollment key, you can enter the key COMMUNITY
to explore the software.
Try Colony
Share Colony with your lab
Want to set up your own group and begin using Colony in your lab?
Contact our team to get a personalized enrollment key
and begin sharing your data.
How it Works
Keep your colony in sync
Set up Colony
Import or define strains, rooms, racks, lineage, users, and tasks.
Manage data in real time
Record cross setups, litters, tagging, transfers, and status — all in one dashboard.
Order genotyping via Colony
Place genotype orders; results populate automatically into the linked mouse records.
Enable AMI (optional)
Connect AMI to Colony data; it begins modeling trends, suggesting breeding plans, and raising alerts.
Review & act
Accept, adjust or ignore AMI’s suggestions. Track performance metrics over time.
Key Features
Maximize your cage
output with AMI
Cage consolidation
Get real-time alerts when low-productivity breeding creates opportunities to consolidate cages and optimize space utilization.
Project planning & estimating
Build new project plans or optimize existing ones using predictive insights that improve accuracy and resource forecasting.
Non-productive breeder management
Automatically identify non-productive breeders and receive intelligent recommendations tailored to your active projects.
Mendelian issue management
Track every litter for Mendelian issues and get proactive warnings when underproducing genotypes are detected.
Pup survival management
Monitor pup survival rates in real time and compare outcomes against your project goals.
Cage card printing
Print and manage cage cards for breeding, weaning, and stock cages directly from your digital workspace.
One platform. Two options.
Colony
Colony
Colony delivers an intuitive, user-friendly platform built to simplify daily workflows, optimize breeding operations, and enhance overall research efficiency. Designed for researchers, technicians, and animal care teams, Colony Basic makes complex management effortless.
Effortlessly manage breeding pairs, monitor litter outcomes, and gain insights to enhance reproductive efficiency and reduce nonproductive cycles.
Plans
Plans that fit your goals
Standard
Colony
Build Your Foundation
Simplify complex breeding workflows and ensure complete accuracy from cage to data report.
Manage breeding, litters, and cage records in one place.
Interactive workflows and task calendars.
Barcode & QR code scanning for easy tracking.
Automated Genotyping integration.
Web-based access for your whole team.
Premium
Colony+AMI
Unlock Predictive Power
Transform your colony data into predictive insights that drive efficiency, accuracy, and animal welfare.
Breeding planning and non-productive breeder alerts.
Pup survival, Mendelian ratios, and sex-ratio tracking.
Cage consolidation and footprint optimization.
Pedigree and ancestry insights.
Real-time notifications and performance alerts.
Measurable Gains
Turning research goals into measurable gains
With Colony+AMI, labs have achieved
Better planning and project estimating.
Maximized facility space utilization.
Easier cage consolidation and resource management.
Increased pup counts through improved breeding efficiency.
Lower animal care and breeding costs.
Reduced animal use through thoughtful planning and oversight.
Proven results, no spreadsheets in sight.
The project planner allows me to plan ahead for upcoming experiments in regards
to how many animals from specific genetic lines that are needed for each project in the lab. AMI is able to tell me exactly how long it would take for any given experiments. AMI also assists with space considerations in order to cut costs and offer up more space in the breeding colony once other mice have aged out.
Principal Investigator, Cedars Sinai
The effects and impact of Automated Genotyping + Colony
Labs using Colony + AMI report
~
0%
fewer unnecessary cages
Genotype assignment time improves by
~
0days
compared to internal benchmarks
Backed by Transnetyx’s foundation
0
%
accuracy
AMI Features
AMI never sleeps
AMI effortlessly tracks breeders, ages, pups, Mendelian ratios, cages, and more—24 hours a day, 7 days a week. At the same time, AMI considers every aspect of your Cagenomics, aligning your research parameters with your colony’s data to deliver actionable insights that help you improve lab efficiency.
Maximize ROI
Cage Consolidation
Plan and Estimate Projects
Non-Productive Breeder Management
Mendelian Issue Management
Pup Loss Management
Try it Today
